Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015832354.1_cds_XP_016504873.1_18266
CDS Infomation

[gene=LOC107822817] [db_xref=GeneID:107822817] [protein=DDB1- and CUL4-associated factor homolog 1-like] [protein_id=XP_016504873.1] [location=join(1787..2049,5495..5576,5679..5795,5884..6062,6148..7030,7113..7210,7341..7761,7933..8529,8615..8794,8871..9506)] [gbkey=CDS]
Sequence

ATGGAGGAGGGGCGGCCCCAACAACAATCATTGGCGGCGGCGGAGGGGGAGGAGGAGCGG
CGTCCGGAGACGACGCCAGCGGAGGATCAGGAGGAAGAAGAAGAAACGGGTGGAGGAGGA
GAGGAAGATGAAGAAGAGGCGGAGAATGATGAGTTGATCATGAAAGCACAAGCTTTTATG
GAGAAAATCACTGCTGCGCCTGATAACCCTAACCCTAATACTATCCATGCCCTTTCTTCT
CTTTTTGAAACTCAAGAATCCAGATACATGGAAGAGAGTGGTCATTCTGCCTCTAATAAC
AGTCGGTCTTCCCATAGCGTTGGACGACTAGGAAACCTTATCCGGGACAATGATGAATTC
TTTGAACTGATATCTTCAAAATTCCTATCTGAGAGGAGATATTCAGTTTCTGTGCAGGCT
GCTGCTACAAGGCTGCTTTTTAGCTGTTCACTAACTTGGATGTATCCACATGTTTTTGAA
GACACTGTGCTGGAAAATCTAAAAAGCTGGACAATGGATGACACAACCAGATTGTCCGGT
GATGATCATTATTGGAAGCATGAGTCAGGTGATCGGAGGTCGTCTGATTCTGAGATGCTG
AAGACCTACTCTACTGGACTTCTTGCTGTATGCTTGGCGAGTGGTGGTCAAGTAGTTGAA
GATGTGTTAACATCTGGGCTCCCAGCAAAAGTTATGCGCTATCTTCGGATTAGAATTTTA
GGGGAGACCACCACAAGCCAAAGGGATGCAACGGCATTGGTGGATGGCAAAGCATCATCA
ACAGGTACTGGTGTAAGAGCTAGAGAGGAATGTAGAACTAGATTGCGGCAAGTTGCAGAA
AGTTCTCACTTGGATAGTACCAGAGTAGCGGAAGATGGATTTCATGGTGATCAAGTTATG
GATAAGGACCGCGATAGAAGTGCCAGTAAGCATATGCGTGGGGATGAACGTTGGACTGAT
GAAGAGCCACCTGATTCTATGGCTGTTGATGAGGATAATTATCAGGCAGATGTAGATGGT
GAAGAAAGATGGCATATCAGAGATTTACGTGAGGGAAAGGCAAAGTCTGGTAACAGATCC
CTAAGGGAAGAAGATCATGATGAGAATGCTAGAGATGACTTATCAAGACGCAGGGTGAAT
CGTGGGTGGACAAGACACAGAGGACGAGGAAGGGTTACTGAGGGTCTTCCAGAGAATGAA
GCAGCTTTGACATCTCCTGGGTCCACAAATAGATTGGGTGGGCAATCTCGGAGCAGAAAT
TTAATCCGAAATCAAGAATCAATAAGAGCACCAGATAGCAAGAAGAATCCGAGTAGGACT
AATGTTGATGGTTTTGTGATGGAGAGGGATGAAAATGATGAATGTTTCCTAGAATGTAAA
GTCGGCTCCAAGGATATCACTGACCTGGTGAAAAAAGCTGTTAGAGCTGCTGAAACAGAA
GCAAAAGCAGCTAATGCTCCAATCGAAGCCATTAAAGCAGCTGGTGATGCTGCTGCAGAA
GTAGTCAAGAATGCTGCTTATGAGGAGTTTAAGAAGACAAATGATGACGAGGCTGCAGTT
TTGGCTGCTTCAAAAGCTGCATCCACAGTCATTGATGCTGGTATTGCAGTTGAAGCTTCA
AGGAGTGCTATTTCTGAAGGTGAATCACAAGATATTAAAGCAACAGCACAAGAAGCAAAT
GAGGATGTCGATGAATTCTTCATACTGGATAGCGACTCTCTTGCAAAGTTGAGAGAGAAG
TTCTGCATCCAGTGTCTTGTTATTTTGGGAGAGTATGTTGAAGTACTTGGACCTGTGTTG
CACGAAAAAGGAGTCGACGTGTGTATTGCGCTGTTGCAGCGCAATTCCAAACATAAAGAG
GGGGGCAAGATTTCGCTTCTTTTGCCTGATGTTCTGAAGCTAATATGTGCTTTGGCCACA
CATCGGAAATTTGCTGCAGTATTTGTGGATCGTGGTGGCATGCAAAAATTGCTTGCTGTC
CCAAGAGCTCCTCAGACTTTCTGTGGTCTTTCTTCATGCTTATTCGCTATAGGGTCAATT
CAGGGAATAATGGAACGTGTTTGTGCCCTTCCTTCAAACATTATTCATCAGGTGGTTGAG
GTGGCACTTCAGCTTCTTGAATGTCCTCAAGATCAAGCCAGAAAAAATGCTGCTTTATTT
TTTGCAGCTGCATTTGTTTTCAGAGCTGTTCTAGATGCTTTTGATGCTCAGGATGGATTA
CAGAAAATGCTTAATCTTTTGCATGATGCTGCAGCAGTGAGATCTGGAGTTTCTTCTGGG
GCATTAACTGCTTCAGGGTCATTACGAAGTGATAGATCACCACCAGAGGTGCTGACAGCA
TCTGAGAAGCAGATAGCATATCACACCTGTGTCGCTCTTCGCCAGTACTTCAGAGCACAT
CTTCTCTTGCTGGCGGATTCAATTCGTCCTAATAAAAGTGTTCGCAGTGCTGCCCGAAAT
ATCCCAAGTGTTAGGGCTGCGTATAAGCCCCTTGACATTAGTAATGAGGCTATGGATGCA
GTTCACCGTTTAATACAGAAAGATCGAAAACTTGGTCCTGCATTTGTCAGGGCCCGCTGG
CCTGTAGTCGACAAGTTTTTAAGTTCCAATGGGCACATTACGATGTTGGAATTATGTCAG
GCTCCACCTGTTGAGCGTTATTTGCATGACTTGCTTCAGTATGCTCTCGGTGTACTTCAT
ATTGTCACTTTAGTACCTTACAGCCGTAAACTTATTGTAAATGCAACATTAAGCAATGAT
CGTGTGGGTATAGCTGTTATATTGGATGCAGCAAACAGTGTTGGTTATGTAGAACCTGAG
ATTGTTGAAGCAGCATTGAATGTGTTGGTCTGTCTCGTGTGTCCCCCACCTTCAATCAGC
AACAAACCATCTGTATCTACTCAAGCACAGCAAACCATTGCTAACCAATCTGCAAATGTT
CCTGGTGGGGAGACCAGAGAACGGAATCCAGAAAGGAGTGAGACCAGGGACAGAAATGCT
GAGCGGCTTATTCCAGATAGAGCTGTTAATGTCTCCAGCCAGAATGAAAATAGAGAAAGG
AATGCAGAATCTACTATACCTGACCGTGGAAGCGCAGCAGTTCCTGGCACATCCGCGGTC
AGTGGTACTTCTCAAGCGCCTGTGTCTACAGTGGCTTCAGGATTAGTTGGAGAACGGAGA
ATTTCATTAGGTGTTGGAGCTGGTTGTGCTGGCCTTGCTGCTCAGCTGGAACAAGGATAC
CGCCAAGCCAGAGAAGCTGTTCGGGCCAACAATGGTATTAAGGTCCTCCTGCAGCTCCTC
CAGCCCCGGATTGTTACTCCTCCAGCTGCAATTGACTGTCTTCGTGCTCTTGCTTGCCGA
GTACTTCTTGGTTTAGCAAGAGATGATACAATTGCACACATATTAACAAAACTTCAGGTA
GGCTCACCTTGGTCTACTCATTTTGACCCCTGCTAA

Peptide Sequence

PEP ID

XP_016504873.1
PEP Infomation

PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Nicotiana tabacum]
Sequence

MEEGRPQQQSLAAAEGEEERRPETTPAEDQEEEEETGGGGEEDEEEAENDELIMKAQAFM
EKITAAPDNPNPNTIHALSSLFETQESRYMEESGHSASNNSRSSHSVGRLGNLIRDNDEF
FELISSKFLSERRYSVSVQAAATRLLFSCSLTWMYPHVFEDTVLENLKSWTMDDTTRLSG
DDHYWKHESGDRRSSDSEMLKTYSTGLLAVCLASGGQVVEDVLTSGLPAKVMRYLRIRIL
GETTTSQRDATALVDGKASSTGTGVRAREECRTRLRQVAESSHLDSTRVAEDGFHGDQVM
DKDRDRSASKHMRGDERWTDEEPPDSMAVDEDNYQADVDGEERWHIRDLREGKAKSGNRS
LREEDHDENARDDLSRRRVNRGWTRHRGRGRVTEGLPENEAALTSPGSTNRLGGQSRSRN
LIRNQESIRAPDSKKNPSRTNVDGFVMERDENDECFLECKVGSKDITDLVKKAVRAAETE
AKAANAPIEAIKAAGDAAAEVVKNAAYEEFKKTNDDEAAVLAASKAASTVIDAGIAVEAS
RSAISEGESQDIKATAQEANEDVDEFFILDSDSLAKLREKFCIQCLVILGEYVEVLGPVL
HEKGVDVCIALLQRNSKHKEGGKISLLLPDVLKLICALATHRKFAAVFVDRGGMQKLLAV
PRAPQTFCGLSSCLFAIGSIQGIMERVCALPSNIIHQVVEVALQLLECPQDQARKNAALF
FAAAFVFRAVLDAFDAQDGLQKMLNLLHDAAAVRSGVSSGALTASGSLRSDRSPPEVLTA
SEKQIAYHTCVALRQYFRAHLLLLADSIRPNKSVRSAARNIPSVRAAYKPLDISNEAMDA
VHRLIQKDRKLGPAFVRARWPVVDKFLSSNGHITMLELCQAPPVERYLHDLLQYALGVLH
IVTLVPYSRKLIVNATLSNDRVGIAVILDAANSVGYVEPEIVEAALNVLVCLVCPPPSIS
NKPSVSTQAQQTIANQSANVPGGETRERNPERSETRDRNAERLIPDRAVNVSSQNENRER
NAESTIPDRGSAAVPGTSAVSGTSQAPVSTVASGLVGERRISLGVGAGCAGLAAQLEQGY
RQAREAVRANNGIKVLLQLLQPRIVTPPAAIDCLRALACRVLLGLARDDTIAHILTKLQV
GSPWSTHFDPC

Transcript Sequence

Gene sequence data has not been registered.